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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
57
ATAC-seq
29
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
62
Transcription
61
DNA accessibility
29
DNA binding
Target of assay
18
histone
18
histone modification
14
broad histone mark
7
control
4
narrow histone mark
4
transcription factor
Date released
74
February, 2021
43
February, 2023
26
October, 2019
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
105
bam
82
bigWig
79
bed narrowPeak
58
tsv
22
bigBed narrowPeak
6
tagAlign
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
txt
Organism
152
Homo sapiens
Biosample type
84
tissue
66
cell line
2
primary cell
Organ
944
pancreas
791
liver
684
connective tissue
519
epithelium
491
adipose tissue
349
kidney
332
heart
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
152
AMP
Genome assembly (visualization)
133
GRCh38
102
hg19
Lab
152
AMP-T2D consortium
month_released!
May, 2019
assembly!
hg18
BIOSAMPLE
ASSAY
152 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
2
tibial artery
1
1
23
2
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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