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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
22
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
49
DNA accessibility
22
DNA binding
Target of assay
18
histone
18
histone modification
14
broad histone mark
control
4
narrow histone mark
4
transcription factor
Date released
64
February, 2021
35
February, 2023
21
October, 2019
3
July, 2019
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
90
bam
82
bigWig
71
bed narrowPeak
58
tsv
22
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
Organism
129
Homo sapiens
Biosample type
64
cell line
63
tissue
2
primary cell
Organ
892
pancreas
683
liver
649
connective tissue
490
epithelium
467
adipose tissue
358
heart
338
kidney
230
brain
175
vasculature
170
blood vessel
159
bone element
129
artery
99
limb
84
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
29
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
129
AMP
Genome assembly (visualization)
125
GRCh38
90
hg19
Lab
129
AMP-T2D consortium
month_released!
May, 2019
assembly!
hg18
target.investigated_as!
control
BIOSAMPLE
ASSAY
129 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
4
tissue
coronary artery
1
36
2
tibial artery
1
1
18
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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