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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
656
ChIP-seq
256
total RNA-seq
100
single cell RNA-seq
81
ATAC-seq
31
DNase-seq
5
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
GRO-seq
1
WGBS
Assay category
656
DNA binding
358
Transcription
113
DNA accessibility
5
3D chromatin structure
1
DNA methylation
Target of assay
365
transcription factor
266
histone
266
histone modification
135
broad histone mark
131
narrow histone mark
88
recombinant protein
72
RNA binding protein
31
chromatin remodeller
23
control
2
other context
2
other post-translational modification
Date released
277
November, 2017
176
May, 2021
90
May, 2020
85
February, 2021
72
September, 2018
57
November, 2018
48
July, 2018
47
June, 2019
46
August, 2017
43
April, 2018
43
October, 2019
27
December, 2018
25
August, 2021
22
July, 2019
20
January, 2019
12
November, 2019
7
August, 2020
7
March, 2020
5
December, 2019
5
November, 2020
5
September, 2017
May, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
December, 2017
2
January, 2018
2
October, 2018
Available data
1189
bam
1134
bigWig
840
fastq
697
bed narrowPeak
460
bigBed narrowPeak
393
tsv
153
zippedFastqFolder
120
tagAlign
108
bed broadPeak
108
bigBed broadPeak
43
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
2
csv
1
txt
1
vcf
Organism
1134
Homo sapiens
Biosample type
tissue
609
primary cell
522
cell line
in vitro differentiated cells
3
stem cell
Organ
343
liver
277
epithelium
248
pancreas
85
vasculature
80
blood vessel
66
heart
58
artery
55
blood
55
bodily fluid
36
kidney
32
connective tissue
20
brain
15
vein
11
musculature of body
8
embryo
3
eye
2
adipose tissue
1
pericardium
Project
940
AMP
184
T1D
10
HPAP
Genome assembly (visualization)
1111
hg19
971
GRCh38
1
hg18
Lab
895
AMP-T2D consortium
215
Kyle Gaulton, UCSD
14
Bing Ren, UCSD
10
Klaus Kaestner, Upenn
Audit category:
94
inconsistent ontology term
1
inconsistent control
Audit category:
56
missing controlled_by
Audit category:
33
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
month_released!
May, 2019
biosample_type!
in vitro differentiated cells
tissue
BIOSAMPLE
ASSAY
1134 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
GRO-seq
WGBS
primary cell
monocyte
84
53
2
pancreatic alpha cell
7
10
12
13
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
+ See 73 more…
cell line
HepG2
326
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
EndoC_BH1
13
33
2
H1-hESC
8
+ See 7 more…
stem cell
hESC
2
1
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