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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
131
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
Assay category
161
DNA binding
133
Transcription
DNA accessibility
4
3D chromatin structure
Target of assay
92
histone
92
histone modification
46
broad histone mark
45
narrow histone mark
37
transcription factor
32
control
6
RNA binding protein
3
chromatin remodeller
Date released
85
May, 2021
67
August, 2017
43
December, 2017
39
February, 2018
28
August, 2021
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
273
bam
246
bigWig
140
fastq
131
tsv
110
bed narrowPeak
40
tagAlign
19
bed bed3+
14
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
Organism
307
Homo sapiens
Biosample type
1995
tissue
584
cell line
336
primary cell
307
in vitro differentiated cells
8
stem cell
Organ
77
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
307
AMP
Genome assembly (visualization)
252
hg19
247
GRCh38
4
hg18
Lab
307
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
105
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
May, 2019
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
307 results
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ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
cardiomyocytes
3
59
neural progenitor cell
21
7
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
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