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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
total RNA-seq
130
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
136
Transcription
130
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
97
histone
97
histone modification
49
broad histone mark
47
narrow histone mark
transcription factor
33
control
9
RNA binding protein
2
chromatin remodeller
Date released
112
May, 2021
46
August, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
15
December, 2017
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
233
bam
205
bigWig
129
tsv
91
fastq
85
bed narrowPeak
34
tagAlign
19
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
324
Homo sapiens
Biosample type
2557
tissue
677
primary cell
324
in vitro differentiated cells
223
cell line
10
stem cell
Organ
75
connective tissue
26
embryo
epithelium
13
liver
2
pancreas
1
adipose tissue
1
heart
Project
324
AMP
Genome assembly (visualization)
243
hg19
211
GRCh38
4
hg18
Lab
282
AMP-T2D consortium
35
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
107
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
May, 2019
organ_slims!
epithelium
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
324 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
5
45
8
1
1
cardiomyocytes
59
embryonic stem cell
7
28
6
1
neural progenitor cell
7
21
10
cardiac precursors (cardiac muscle cell)
19
1
1
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