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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
29
ChIP-seq
2
single cell RNA-seq
Assay category
58
Transcription
45
DNA accessibility
29
DNA binding
Target of assay
18
histone
18
histone modification
14
broad histone mark
7
control
4
narrow histone mark
4
transcription factor
Date released
66
February, 2021
35
February, 2023
24
October, 2019
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
Available data
97
bam
82
bigWig
71
bed narrowPeak
58
tsv
22
bigBed narrowPeak
6
tagAlign
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
132
Homo sapiens
Biosample type
66
cell line
64
tissue
2
primary cell
Organ
915
pancreas
778
liver
657
connective tissue
498
epithelium
485
adipose tissue
302
heart
271
kidney
223
brain
173
vasculature
169
blood vessel
159
bone element
132
artery
79
limb
69
blood
69
bodily fluid
57
eye
55
musculature of body
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
132
AMP
Genome assembly (visualization)
121
GRCh38
86
hg19
Lab
132
AMP-T2D consortium
month_released!
May, 2019
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
132 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
tibial artery
1
1
23
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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