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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
26
total RNA-seq
14
ATAC-seq
1
Hi-C
1
single cell RNA-seq
Assay category
66
DNA binding
27
Transcription
14
DNA accessibility
1
3D chromatin structure
Target of assay
32
histone
32
histone modification
28
transcription factor
17
broad histone mark
15
narrow histone mark
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
399
May, 2021
370
August, 2017
341
May, 2020
336
November, 2017
319
August, 2021
305
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
108
fastq
106
bam
102
bigWig
76
bed narrowPeak
44
bigBed narrowPeak
26
tsv
1
csv
Organism
108
Homo sapiens
Biosample type
73
primary cell
28
cell line
7
tissue
Organ
72
pancreas
61
epithelium
27
blood
27
bodily fluid
7
spleen
1
liver
Project
108
AMP
Genome assembly (visualization)
102
GRCh38
102
hg19
Lab
108
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
32
missing controlled_by
month_released!
May, 2019
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
108 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
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cell line
GM12878
27
HepG2
1
tissue
spleen
7
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