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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
175
DNA binding
24
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
150
histone
150
histone modification
99
narrow histone mark
51
broad histone mark
28
control
Date released
86
October, 2019
79
November, 2017
May, 2019
18
July, 2019
13
October, 2017
12
February, 2020
2
March, 2020
1
February, 2023
Available data
215
bam
197
bigWig
178
bed narrowPeak
118
tagAlign
102
bigBed narrowPeak
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
211
Homo sapiens
Biosample type
201
tissue
10
primary cell
Organ
923
pancreas
728
liver
674
connective tissue
497
epithelium
488
adipose tissue
342
heart
271
kidney
211
brain
169
vasculature
167
blood vessel
159
bone element
132
artery
79
limb
69
blood
69
bodily fluid
57
eye
43
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
211
AMP
Genome assembly (visualization)
146
GRCh38
102
hg19
Lab
211
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
month_released!
May, 2019
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
211 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
17
1
1
1
substantia nigra
15
1
caudate nucleus
14
1
cingulate gyrus
12
+ See 72 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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