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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
Assay category
1401
Transcription
49
DNA binding
26
DNA accessibility
17
DNA methylation
2
3D chromatin structure
Target of assay
23
transcription factor
17
histone
17
histone modification
12
narrow histone mark
9
control
5
broad histone mark
1
RNA binding protein
Date released
40
August, 2017
5
December, 2017
2
October, 2019
2
September, 2017
Available data
1158
bigWig
1128
bam
bed narrowPeak
671
bigBed narrowPeak
652
fastq
246
tagAlign
76
bed broadPeak
62
bigBed broadPeak
53
bed bed3+
1
tagAlign bed3+
Organism
49
Homo sapiens
Biosample type
26
tissue
12
primary cell
10
in vitro differentiated cells
1
stem cell
Organ
23
pancreas
18
connective tissue
12
adipose tissue
2
brain
1
embryo
1
liver
Project
49
AMP
Genome assembly (visualization)
77
hg19
49
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
38
missing controlled_by
month_released!
May, 2019
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
49 results
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Clear Filters
ChIP-seq
tissue
white adipose tissue
12
islet of Langerhans
11
dorsal plus ventral thalamus
1
liver
1
planum polare
1
primary cell
pancreatic endocrine cell
12
in vitro differentiated cells
adipocyte
6
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
1
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