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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
45
DNA binding
24
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
28
control
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
Date released
27
November, 2017
17
July, 2019
12
February, 2020
11
October, 2019
10
October, 2017
May, 2019
2
March, 2020
1
February, 2023
Available data
215
bam
197
bigWig
bed narrowPeak
118
tagAlign
102
bigBed narrowPeak
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
80
Homo sapiens
Biosample type
70
tissue
10
primary cell
Organ
721
pancreas
605
connective tissue
478
adipose tissue
366
epithelium
350
liver
196
heart
170
kidney
151
bone element
92
vasculature
90
blood vessel
80
brain
65
artery
35
musculature of body
29
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
23
hg19
16
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
month_released!
May, 2019
November, 2020
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
9
1
1
1
cingulate gyrus
7
layer of hippocampus
6
cerebellum (Hemisphere)
2
1
1
1
substantia nigra
4
1
+ See 23 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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