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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
8
ChIP-seq
1
GRO-seq
1
pCHi-C
Assay category
14
Transcription
8
DNA binding
Target of assay
7
control
1
histone
1
histone modification
1
narrow histone mark
Date released
8
August, 2021
7
February, 2018
5
December, 2017
2
May, 2021
1
January, 2018
1
March, 2020
Available data
36
bam
29
bigWig
27
fastq
15
tsv
bed narrowPeak
3
bed bed3+
Organism
24
Homo sapiens
Biosample type
15
in vitro differentiated cells
8
cell line
1
tissue
Organ
731
pancreas
609
connective tissue
478
adipose tissue
372
epithelium
350
liver
196
heart
170
kidney
151
bone element
92
vasculature
90
blood vessel
80
brain
65
artery
35
musculature of body
29
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
24
AMP
Genome assembly (visualization)
15
GRCh38
15
hg19
1
hg18
Lab
24
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
month_released!
May, 2019
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
24 results
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Clear Filters
total RNA-seq
ChIP-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
4
6
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
tissue
adrenal gland
1
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