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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
934
total RNA-seq
572
ChIP-seq
ATAC-seq
174
single cell RNA-seq
168
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
17
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1124
Transcription
572
DNA binding
198
DNA accessibility
25
DNA methylation
16
3D chromatin structure
Target of assay
465
histone
465
histone modification
263
narrow histone mark
202
broad histone mark
98
control
11
transcription factor
9
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
226
October, 2019
193
May, 2020
165
August, 2021
163
June, 2019
118
July, 2018
May, 2019
109
August, 2017
82
November, 2017
80
April, 2019
71
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
38
March, 2020
25
February, 2020
22
May, 2022
20
November, 2019
19
April, 2020
16
February, 2023
16
October, 2018
8
January, 2021
6
October, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1728
bam
1636
bigWig
1075
tsv
683
bed narrowPeak
465
bigBed narrowPeak
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2052
Homo sapiens
Biosample type
2054
tissue
506
primary cell
211
in vitro differentiated cells
206
cell line
6
stem cell
Organ
500
connective tissue
441
adipose tissue
258
liver
253
heart
252
pancreas
224
kidney
222
brain
146
bone element
107
limb
72
musculature of body
45
blood vessel
45
vasculature
42
nerve
31
artery
28
eye
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
1968
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1339
GRCh38
1273
hg19
Lab
1837
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
17
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
90
inconsistent ontology term
9
audit script error
month_released!
May, 2019
files.file_type!
fastq
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
2054 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
1
islet of Langerhans
195
43
7
4
3
1
4
liver
167
78
1
1
2
1
1
kidney
49
27
64
13
6
1
1
1
bone element
84
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