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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
172
DNA binding
34
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
152
histone
152
histone modification
103
narrow histone mark
49
broad histone mark
23
control
Date released
86
October, 2019
82
November, 2017
30
June, 2019
May, 2019
18
July, 2019
12
February, 2020
6
October, 2017
2
March, 2020
1
February, 2023
Available data
215
bam
197
bigWig
178
bed narrowPeak
118
tagAlign
102
bigBed narrowPeak
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
237
Homo sapiens
Biosample type
225
tissue
12
primary cell
Organ
583
connective tissue
473
pancreas
447
adipose tissue
372
heart
326
liver
302
kidney
262
epithelium
237
brain
180
vasculature
177
blood vessel
159
bone element
136
artery
115
limb
87
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
237
AMP
Genome assembly (visualization)
177
GRCh38
122
hg19
Lab
237
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
May, 2019
September, 2023
files.file_type!
fastq
BIOSAMPLE
ASSAY
237 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
11
12
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
cingulate gyrus
14
+ See 77 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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