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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
56
total RNA-seq
46
ATAC-seq
8
snATAC-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
83
DNA binding
58
DNA accessibility
58
Transcription
Target of assay
51
transcription factor
19
histone
19
histone modification
14
broad histone mark
11
control
10
RNA binding protein
10
chromatin remodeller
5
narrow histone mark
Date released
60
February, 2021
35
February, 2023
27
December, 2018
26
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
January, 2018
Available data
157
bam
137
bigWig
125
bed narrowPeak
76
bigBed narrowPeak
60
fastq
58
tsv
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
199
Homo sapiens
Biosample type
121
cell line
68
tissue
10
primary cell
Organ
925
pancreas
705
liver
662
connective tissue
512
epithelium
483
adipose tissue
366
heart
349
kidney
180
vasculature
174
blood vessel
159
bone element
140
brain
130
artery
115
limb
74
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
191
AMP
8
T1D
Genome assembly (visualization)
175
GRCh38
141
hg19
Lab
191
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
May, 2019
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
199 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
cell line
GM12878
60
1
smooth muscle cell of the coronary artery
52
8
tissue
coronary artery
1
36
2
tibial artery
23
1
1
2
pulmonary artery
2
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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