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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
254
ChIP-seq
245
total RNA-seq
161
ATAC-seq
135
single cell RNA-seq
35
snATAC-seq
27
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
6
WGBS
2
small RNA-seq
1
DNAme array
Assay category
382
Transcription
254
DNA binding
223
DNA accessibility
17
DNA methylation
6
3D chromatin structure
Target of assay
218
histone
218
histone modification
111
broad histone mark
107
narrow histone mark
31
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
53
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
40
September, 2020
27
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
585
bigWig
577
bam
406
fastq
274
bed narrowPeak
268
tsv
zippedFastqFolder
100
tagAlign
88
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
899
Homo sapiens
Biosample type
2579
tissue
899
primary cell
596
cell line
394
in vitro differentiated cells
10
stem cell
Organ
321
epithelium
266
pancreas
39
connective tissue
37
vasculature
blood vessel
31
kidney
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
523
AMP
204
T1D
171
HPAP
1
ITG
Genome assembly (visualization)
599
hg19
514
GRCh38
Lab
488
AMP-T2D consortium
239
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
1
ITG
Audit category:
51
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2019
files.file_type!
zippedFastqFolder
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
899 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
13
12
1
6
Langerhans cell
33
27
pancreatic beta cell
13
21
10
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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