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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
10
ChIP-seq
6
Hi-C
6
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
10
DNA binding
9
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
2
control
Date released
43
June, 2019
August, 2017
10
July, 2019
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
50
bam
49
bigWig
41
bed narrowPeak
41
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
9
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
txt
Organism
63
Homo sapiens
Biosample type
49
tissue
14
primary cell
Organ
756
pancreas
737
liver
559
connective tissue
490
epithelium
434
adipose tissue
349
kidney
332
heart
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
69
blood
69
bodily fluid
63
musculature of body
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
63
AMP
Genome assembly (visualization)
52
hg19
48
GRCh38
Lab
63
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
May, 2019
August, 2017
BIOSAMPLE
ASSAY
63 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
RRBS
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
skeletal muscle tissue
1
1
1
1
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
1
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