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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
Assay category
Transcription
113
DNA binding
77
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
84
histone
84
histone modification
50
broad histone mark
34
narrow histone mark
15
transcription factor
14
control
9
RNA binding protein
Date released
57
April, 2019
40
May, 2024
35
February, 2023
35
June, 2019
May, 2019
14
February, 2021
14
July, 2019
6
October, 2019
5
March, 2020
Available data
176
bed narrowPeak
139
bigWig
120
bam
79
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
3
tsv
Organism
206
Homo sapiens
Biosample type
183
tissue
14
cell line
9
primary cell
Organ
598
liver
465
pancreas
317
epithelium
234
brain
222
kidney
206
heart
203
connective tissue
119
vasculature
113
blood vessel
108
limb
97
bone element
90
adipose tissue
80
musculature of body
78
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
206
AMP
Genome assembly (visualization)
181
GRCh38
103
hg19
Lab
166
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
month_released!
May, 2019
December, 2019
assay_slims!
Transcription
BIOSAMPLE
ASSAY
206 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
tissue
heart left ventricle
35
2
3
4
1
1
1
left cardiac atrium
40
1
coronary artery
36
2
heart
14
18
1
1
heart right ventricle
13
1
2
1
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
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