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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
190
DNA binding
Target of assay
162
histone
162
histone modification
107
narrow histone mark
55
broad histone mark
25
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
84
October, 2019
May, 2019
15
October, 2017
Available data
168
bam
147
bigWig
145
bed narrowPeak
118
tagAlign
69
bigBed narrowPeak
18
fastq
15
bed broadPeak
6
bigBed broadPeak
1
tagAlign bed3+
Organism
190
Homo sapiens
Biosample type
181
tissue
9
primary cell
Organ
552
liver
216
pancreas
190
brain
153
connective tissue
124
epithelium
113
heart
73
adipose tissue
60
blood
60
bodily fluid
59
limb
52
vasculature
49
blood vessel
47
kidney
35
nerve
32
musculature of body
29
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
190
AMP
Genome assembly (visualization)
146
GRCh38
98
hg19
Lab
190
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
May, 2019
December, 2019
BIOSAMPLE
ASSAY
190 results
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ChIP-seq
tissue
layer of hippocampus
23
brain
20
substantia nigra
16
caudate nucleus
15
cingulate gyrus
14
+ See 62 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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