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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
22
ChIP-seq
4
RRBS
4
total RNA-seq
2
Hi-C
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
22
DNA binding
5
Transcription
4
DNA methylation
2
3D chromatin structure
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
3
control
Date released
32
June, 2019
26
August, 2017
July, 2019
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
48
bigWig
45
bed broadPeak
45
bed narrowPeak
34
bam
33
bed bed3+
32
bigBed broadPeak
32
bigBed narrowPeak
15
tagAlign
5
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
68
Homo sapiens
Biosample type
68
tissue
primary cell
Organ
769
liver
635
connective tissue
592
pancreas
479
adipose tissue
339
heart
314
kidney
226
brain
158
bone element
142
blood vessel
142
vasculature
133
artery
118
epithelium
110
limb
68
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
68
AMP
Genome assembly (visualization)
53
hg19
34
GRCh38
Lab
68
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
May, 2019
July, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
68 results
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DNase-seq
ChIP-seq
RRBS
total RNA-seq
Hi-C
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of arm
17
muscle of leg
13
psoas muscle
2
2
1
forelimb muscle
1
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