Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ChIP-seq
44
ATAC-seq
6
single cell RNA-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
62
Transcription
45
DNA accessibility
45
DNA binding
3
3D chromatin structure
Target of assay
31
histone
31
histone modification
21
broad histone mark
10
control
10
narrow histone mark
4
transcription factor
Date released
66
February, 2021
May, 2019
41
October, 2019
35
February, 2023
July, 2019
6
August, 2021
4
March, 2020
3
February, 2020
1
November, 2017
Available data
121
bam
101
bigWig
88
bed narrowPeak
63
tsv
40
bigBed narrowPeak
13
bed broadPeak
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
1
tar
Organism
156
Homo sapiens
Biosample type
71
tissue
66
cell line
19
primary cell
Organ
859
pancreas
718
liver
657
connective tissue
477
adipose tissue
423
epithelium
317
heart
260
kidney
202
brain
159
bone element
157
vasculature
156
blood vessel
129
artery
74
limb
69
blood
69
bodily fluid
56
eye
46
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
156
AMP
Genome assembly (visualization)
129
GRCh38
99
hg19
Lab
156
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
May, 2019
July, 2019
September, 2018
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
156 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
1
35
tibial artery
1
23
1
aorta
1
4
1
1
pulmonary artery
2
ascending aorta
1
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
15
2
1
brain microvascular endothelial cell
1
Download