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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
32
DNase-seq
13
total RNA-seq
3
ATAC-seq
2
pCHi-C
Assay category
190
DNA binding
35
DNA accessibility
13
Transcription
Target of assay
162
histone
162
histone modification
107
narrow histone mark
55
broad histone mark
25
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
30
June, 2019
May, 2019
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
202
bam
181
bigWig
177
bed narrowPeak
118
tagAlign
101
bigBed narrowPeak
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
21
fastq
15
tsv
1
bed bed3
1
tagAlign bed3+
Organism
240
Homo sapiens
Biosample type
226
tissue
14
primary cell
Organ
938
pancreas
781
liver
666
connective tissue
506
epithelium
479
adipose tissue
347
heart
338
kidney
240
brain
174
vasculature
169
blood vessel
159
bone element
133
artery
110
limb
79
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
240
AMP
Genome assembly (visualization)
180
GRCh38
122
hg19
Lab
240
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
May, 2019
July, 2019
BIOSAMPLE
ASSAY
240 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
cingulate gyrus
14
+ See 74 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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