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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
93
single cell RNA-seq
62
total RNA-seq
43
ATAC-seq
30
DNase-seq
3
Hi-C
3
pCHi-C
Assay category
155
Transcription
113
DNA binding
73
DNA accessibility
3
3D chromatin structure
Target of assay
84
histone
84
histone modification
50
broad histone mark
34
narrow histone mark
15
transcription factor
14
control
9
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
36
February, 2023
35
June, 2019
July, 2019
May, 2019
8
October, 2019
7
March, 2020
3
February, 2020
3
May, 2021
Available data
188
bigWig
172
bed narrowPeak
169
bam
157
tsv
79
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
347
Homo sapiens
Biosample type
272
tissue
66
cell line
8
primary cell
1
in vitro differentiated cells
Organ
938
pancreas
781
liver
666
connective tissue
506
epithelium
479
adipose tissue
347
heart
338
kidney
240
brain
174
vasculature
169
blood vessel
159
bone element
133
artery
110
limb
79
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
347
AMP
Genome assembly (visualization)
230
GRCh38
156
hg19
Lab
307
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
month_released!
May, 2019
July, 2019
BIOSAMPLE
ASSAY
347 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
tissue
heart left ventricle
35
18
1
3
1
1
left cardiac atrium
40
18
1
coronary artery
1
35
2
heart
14
1
2
18
1
heart right ventricle
13
17
1
1
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
cardiac fibroblast
5
3
in vitro differentiated cells
cardiac fibroblast
1
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