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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
21
ChIP-seq
4
RRBS
4
total RNA-seq
2
Hi-C
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
21
DNA binding
5
Transcription
4
DNA methylation
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
narrow histone mark
5
control
Date released
39
June, 2019
19
August, 2017
July, 2019
5
March, 2020
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
48
bigWig
45
bed narrowPeak
41
bam
41
bed broadPeak
37
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
10
tagAlign
5
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
68
Homo sapiens
Biosample type
61
tissue
7
primary cell
Organ
866
pancreas
721
liver
633
connective tissue
467
adipose tissue
458
epithelium
324
kidney
313
heart
162
vasculature
159
bone element
158
blood vessel
133
brain
129
artery
97
limb
68
blood
68
bodily fluid
68
musculature of body
57
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
68
AMP
Genome assembly (visualization)
53
hg19
39
GRCh38
Lab
68
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
month_released!
May, 2019
July, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
68 results
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DNase-seq
ChIP-seq
RRBS
total RNA-seq
Hi-C
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
15
4
1
1
1
muscle of arm
17
muscle of leg
13
psoas muscle
2
2
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
5
skeletal muscle cell
1
1
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