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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1006
total RNA-seq
733
ChIP-seq
254
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
15
WGBS
12
Hi-C
5
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1180
Transcription
733
DNA binding
462
DNA accessibility
20
DNA methylation
12
3D chromatin structure
Target of assay
504
histone modification
503
histone
276
narrow histone mark
227
broad histone mark
165
control
85
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
282
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
May, 2019
95
February, 2023
82
November, 2017
July, 2019
76
April, 2019
66
May, 2022
63
October, 2018
47
September, 2023
46
December, 2017
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1709
bam
1558
bigWig
1029
tsv
827
bed narrowPeak
450
bigBed narrowPeak
362
fastq
238
tagAlign
213
bed broadPeak
203
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
11
bed bedMethyl
11
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2517
Homo sapiens
Biosample type
2526
tissue
1043
primary cell
597
cell line
383
in vitro differentiated cells
10
stem cell
Organ
532
connective tissue
489
pancreas
473
adipose tissue
351
liver
294
kidney
229
heart
226
brain
158
bone element
110
limb
76
blood vessel
76
vasculature
68
musculature of body
67
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2429
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1648
GRCh38
1584
hg19
Lab
2214
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2019
July, 2019
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
2526 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
islet of Langerhans
298
69
68
1
7
4
3
4
1
adipose tissue
382
2
3
1
3
liver
165
144
20
2
1
1
3
1
1
kidney
49
26
75
13
64
6
1
bone element
84
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