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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
32
ChIP-seq
5
RRBS
4
Hi-C
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
32
DNA binding
7
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
43
June, 2019
26
August, 2017
10
July, 2019
May, 2019
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
60
bigWig
54
bed narrowPeak
48
bam
46
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
84
Homo sapiens
Biosample type
70
tissue
14
primary cell
Organ
930
pancreas
788
liver
682
connective tissue
513
epithelium
490
adipose tissue
347
kidney
325
heart
256
brain
182
vasculature
176
blood vessel
159
bone element
136
artery
115
limb
84
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
84
AMP
Genome assembly (visualization)
63
hg19
46
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
May, 2019
March, 2020
BIOSAMPLE
ASSAY
84 results
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DNase-seq
ChIP-seq
RRBS
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
1
muscle of arm
17
muscle of leg
13
1
gastrocnemius medialis
4
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
1
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