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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
DNase-seq
32
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
53
DNA accessibility
32
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
61
June, 2019
26
August, 2017
10
July, 2019
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
80
bigWig
72
bed narrowPeak
68
bam
64
bed broadPeak
59
bigBed narrowPeak
52
bed bed3+
51
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
107
Homo sapiens
Biosample type
93
tissue
14
primary cell
Organ
934
pancreas
791
liver
678
connective tissue
513
epithelium
491
adipose tissue
372
heart
349
kidney
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
107
AMP
Genome assembly (visualization)
85
hg19
66
GRCh38
Lab
107
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
May, 2019
November, 2020
BIOSAMPLE
ASSAY
107 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of arm
17
muscle of leg
13
1
renal pelvis
10
gastrocnemius medialis
4
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
1
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