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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
539
ChIP-seq
Assay category
539
DNA binding
Target of assay
539
histone modification
538
histone
291
narrow histone mark
247
broad histone mark
165
control
90
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
168
October, 2019
124
August, 2017
May, 2019
70
November, 2017
60
April, 2019
35
May, 2024
30
October, 2018
27
May, 2020
12
October, 2017
6
January, 2019
5
December, 2017
2
March, 2020
Available data
433
bigWig
431
bed narrowPeak
377
bam
223
bigBed narrowPeak
186
tagAlign
74
fastq
35
bed broadPeak
12
bed bed3+
1
tagAlign bed3+
Organism
533
Homo sapiens
Biosample type
539
tissue
219
primary cell
112
in vitro differentiated cells
38
cell line
2
stem cell
Organ
159
brain
82
heart
72
pancreas
70
liver
43
limb
33
connective tissue
32
adipose tissue
24
nerve
20
kidney
19
musculature of body
18
artery
18
blood vessel
18
vasculature
6
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
537
AMP
2
T1D
Genome assembly (visualization)
406
GRCh38
349
hg19
Lab
504
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2019
organ_slims!
vein
BIOSAMPLE
ASSAY
539 results
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Clear Filters
ChIP-seq
tissue
liver
65
islet of Langerhans
51
left cardiac atrium
35
subcutaneous abdominal adipose tissue
31
heart left ventricle
24
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