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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
20
ChIP-seq
13
ATAC-seq
4
total RNA-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
20
DNA binding
14
DNA accessibility
4
Transcription
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
92
February, 2021
9
November, 2018
8
February, 2023
7
December, 2018
7
January, 2019
1
May, 2021
1
October, 2017
Available data
90
bam
88
txt
74
bigWig
tsv
24
fastq
22
bed narrowPeak
13
bigBed narrowPeak
4
bed bed3
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
125
Homo sapiens
Biosample type
124
tissue
1
primary cell
Organ
617
liver
527
pancreas
363
epithelium
325
kidney
232
brain
206
connective tissue
204
heart
118
vasculature
112
blood vessel
108
limb
101
bone element
90
adipose tissue
80
musculature of body
78
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
124
AMP
1
T1D
Genome assembly (visualization)
26
hg19
24
GRCh38
Lab
124
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
month_released!
May, 2019
files.file_type!
tsv
BIOSAMPLE
ASSAY
125 results
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RNA microarray
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
DNase-seq
pCHi-C
tissue
bone element
84
spleen
20
1
2
1
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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primary cell
megakaryocyte
1
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