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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
56
total RNA-seq
37
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
162
DNA accessibility
121
Transcription
37
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
8
control
2
RNA binding protein
2
transcription factor
Date released
128
August, 2021
81
June, 2019
47
September, 2023
23
April, 2019
15
October, 2019
14
May, 2023
11
July, 2019
8
February, 2021
May, 2019
3
December, 2019
Available data
171
bed narrowPeak
124
bam
115
bigWig
99
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
330
Homo sapiens
Biosample type
299
tissue
31
primary cell
cell line
Organ
852
pancreas
684
connective tissue
491
adipose tissue
440
epithelium
390
liver
330
kidney
266
heart
258
brain
159
bone element
120
vasculature
115
limb
114
blood vessel
89
musculature of body
70
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
283
AMP
47
KPMP
Genome assembly (visualization)
189
GRCh38
113
hg19
Lab
142
Katalin Susztak, Upenn
141
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
5
inconsistent ontology term
month_released!
May, 2019
biosample_type!
cell line
BIOSAMPLE
ASSAY
330 results
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DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
75
64
49
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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primary cell
epithelial cell of proximal tubule
1
1
10
1
kidney tubule cell
3
1
kidney epithelial cell
1
1
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
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