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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
11
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
6
histone
6
histone modification
5
control
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
10
July, 2019
5
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
May, 2019
Available data
62
bigWig
bed narrowPeak
50
bam
46
bed broadPeak
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
35
Homo sapiens
Biosample type
30
tissue
5
primary cell
Organ
731
pancreas
606
connective tissue
477
adipose tissue
372
epithelium
350
liver
196
heart
170
kidney
151
bone element
92
vasculature
90
blood vessel
80
brain
65
artery
35
musculature of body
29
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
35
AMP
Genome assembly (visualization)
13
hg19
7
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
May, 2019
files.file_type!
bigBed narrowPeak
bed narrowPeak
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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