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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
70
total RNA-seq
34
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
70
Transcription
Date released
76
May, 2021
May, 2020
6
May, 2022
5
February, 2023
Available data
57
bam
53
bigWig
51
tsv
6
fastq
6
txt
2
bed bed3+
Organism
87
Homo sapiens
Biosample type
69
primary cell
13
tissue
5
in vitro differentiated cells
Organ
12
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
73
T1D
14
AMP
Genome assembly (visualization)
53
hg19
51
GRCh38
Lab
1141
AMP-T2D consortium
92
Klaus Kaestner, Upenn
87
Kyle Gaulton, UCSD
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
month_released!
May, 2020
BIOSAMPLE
ASSAY
87 results
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total RNA-seq
pCHi-C
primary cell
monocyte
51
1
CD8-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
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tissue
islet of Langerhans
11
pancreas
1
thymus
1
in vitro differentiated cells
embryonic stem cell
5
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