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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1620
ChIP-seq
1194
total RNA-seq
385
ATAC-seq
361
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
23
pCHi-C
22
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1194
Transcription
Date released
523
February, 2021
May, 2020
120
July, 2018
98
May, 2021
89
August, 2017
89
February, 2023
67
August, 2021
44
July, 2019
28
October, 2019
26
May, 2022
26
September, 2018
25
February, 2020
20
November, 2019
16
September, 2020
March, 2020
6
April, 2018
5
December, 2019
5
January, 2019
4
November, 2020
2
October, 2018
1
May, 2023
Available data
995
tsv
962
bam
958
bigWig
228
fastq
59
txt
2
bed bed3+
Organism
1194
Homo sapiens
Biosample type
885
tissue
200
primary cell
in vitro differentiated cells
109
cell line
Organ
465
connective tissue
398
adipose tissue
398
pancreas
127
epithelium
69
heart
62
bone element
60
blood vessel
60
kidney
60
vasculature
56
artery
45
liver
19
eye
17
brain
8
embryo
7
limb
5
nerve
4
musculature of body
4
skeleton
1
pericardium
1
spinal cord
Project
1046
AMP
92
HPAP
56
T1D
Genome assembly (visualization)
959
hg19
957
GRCh38
Lab
958
AMP-T2D consortium
92
Klaus Kaestner, Upenn
65
Kyle Gaulton, UCSD
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
35
inconsistent ontology term
month_released!
May, 2020
March, 2020
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
1194 results
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Clear Filters
total RNA-seq
tissue
adipose tissue
382
islet of Langerhans
296
bone tissue
58
kidney
49
liver
23
+ See 44 more…
primary cell
monocyte
52
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
hepatocyte
5
+ See 20 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
31
HepG2
14
H1-hESC
8
RCC 7860 HIF1a re-expression
1
+ See 3 more…
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