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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
25
ChIP-seq
10
ATAC-seq
4
DNase-seq
Assay category
54
Transcription
25
DNA binding
14
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
21
October, 2019
3
July, 2019
3
May, 2019
2
June, 2019
Available data
93
bam
85
bigWig
54
tsv
39
bed narrowPeak
25
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
Organism
93
Homo sapiens
Biosample type
64
cell line
27
tissue
2
primary cell
Organ
658
pancreas
585
connective tissue
455
liver
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
93
AMP
Genome assembly (visualization)
128
GRCh38
93
hg19
Lab
93
AMP-T2D consortium
month_released!
May, 2020
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
93 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
4
8
tissue
tibial artery
18
1
2
coronary artery
3
1
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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