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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
60
total RNA-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
88
DNA binding
64
Transcription
29
DNA accessibility
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
May, 2020
23
February, 2023
16
January, 2021
7
March, 2020
4
March, 2023
Available data
141
bam
141
bigWig
88
bed narrowPeak
84
tagAlign
53
tsv
Organism
199
Homo sapiens
Biosample type
159
primary cell
31
tissue
11
cell line
2
stem cell
Organ
34
pancreas
8
blood
8
bodily fluid
4
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3956
AMP
324
HPAP
199
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
141
GRCh38
141
hg19
Lab
191
Kyle Gaulton, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
5
inconsistent ontology term
month_released!
May, 2020
BIOSAMPLE
ASSAY
203 results
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ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
84
51
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 11 more…
tissue
islet of Langerhans
2
7
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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