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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
200
total RNA-seq
187
single cell RNA-seq
100
ATAC-seq
56
snATAC-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
389
Transcription
279
DNA binding
188
DNA accessibility
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
May, 2020
93
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
42
February, 2021
34
October, 2019
22
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
523
bigWig
519
bam
402
fastq
295
bed narrowPeak
219
tsv
112
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
883
Homo sapiens
Biosample type
2506
tissue
883
primary cell
660
cell line
394
in vitro differentiated cells
10
stem cell
Organ
353
epithelium
299
pancreas
38
connective tissue
36
vasculature
33
kidney
31
blood vessel
22
vein
20
brain
13
liver
13
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
446
AMP
277
HPAP
159
T1D
1
ITG
Genome assembly (visualization)
528
hg19
491
GRCh38
Lab
411
AMP-T2D consortium
277
Klaus Kaestner, Upenn
194
Kyle Gaulton, UCSD
1
ITG
Audit category:
44
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2020
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
883 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
85
52
13
1
Langerhans cell
85
48
pancreatic alpha cell
13
52
12
35
1
pancreatic beta cell
13
21
12
23
1
exocrine cell
39
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