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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
200
total RNA-seq
187
single cell RNA-seq
100
ATAC-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
389
Transcription
269
DNA binding
188
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
190
May, 2021
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
51
June, 2019
48
July, 2018
47
February, 2021
43
April, 2018
34
October, 2019
31
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
513
bigWig
508
bam
404
fastq
285
bed narrowPeak
225
tsv
153
zippedFastqFolder
100
tagAlign
99
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
914
Homo sapiens
Biosample type
2531
tissue
914
primary cell
591
cell line
378
in vitro differentiated cells
6
stem cell
Organ
401
epithelium
346
pancreas
36
connective tissue
35
vasculature
34
kidney
30
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
446
AMP
324
HPAP
143
T1D
1
ITG
Genome assembly (visualization)
527
hg19
482
GRCh38
Lab
411
AMP-T2D consortium
324
Klaus Kaestner, Upenn
178
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2020
assay_title!
pCHi-C
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
914 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
52
13
1
pancreatic alpha cell
13
52
12
35
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
12
23
16
1
exocrine cell
39
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