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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
17
total RNA-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
22
DNA binding
17
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
324
November, 2017
227
May, 2021
May, 2020
144
February, 2021
134
May, 2022
94
February, 2023
73
September, 2018
64
October, 2019
62
November, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
August, 2021
48
July, 2018
43
April, 2018
31
July, 2019
28
December, 2018
23
January, 2019
16
November, 2019
12
March, 2020
12
November, 2020
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
October, 2022
3
August, 2018
3
June, 2018
3
March, 2023
2
October, 2018
1
January, 2018
Available data
25
bigWig
17
bed narrowPeak
17
tsv
12
bam
4
tagAlign
3
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
48
Homo sapiens
Biosample type
229
tissue
44
cell line
42
in vitro differentiated cells
4
primary cell
Organ
35
liver
8
embryo
6
epithelium
2
kidney
2
pancreas
Project
48
AMP
Genome assembly (visualization)
26
hg19
11
GRCh38
Lab
34
Bing Ren, UCSD
14
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
May, 2020
BIOSAMPLE
ASSAY
48 results
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Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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