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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
74
single cell RNA-seq
71
ATAC-seq
66
ChIP-seq
47
WGBS
3
Hi-C
Assay category
155
Transcription
71
DNA accessibility
66
DNA binding
47
DNA methylation
3
3D chromatin structure
Target of assay
54
histone
54
histone modification
27
broad histone mark
27
narrow histone mark
12
control
Date released
80
May, 2022
72
September, 2018
37
August, 2017
37
February, 2023
37
July, 2018
33
April, 2018
19
September, 2020
7
August, 2020
6
February, 2021
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
254
fastq
190
bam
188
bigWig
108
tsv
80
zippedFastqFolder
64
bed narrowPeak
22
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
342
Homo sapiens
Biosample type
500
tissue
342
primary cell
92
cell line
3
in vitro differentiated cells
Organ
402
epithelium
342
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
190
AMP
152
HPAP
Genome assembly (visualization)
188
GRCh38
181
hg19
Lab
190
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
month_released!
May, 2020
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
342 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
52
12
35
11
31
1
pancreatic beta cell
21
12
23
11
16
1
pancreatic acinar cell
4
12
9
8
1
pancreatic ductal cell
4
10
4
13
pancreatic endocrine cell
23
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