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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
Assay category
114
DNA binding
Target of assay
220
histone
220
histone modification
114
broad histone mark
106
narrow histone mark
30
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
66
May, 2021
17
September, 2018
16
August, 2017
12
October, 2019
2
May, 2019
1
August, 2021
Available data
110
bigWig
104
bed narrowPeak
92
bam
51
tagAlign
33
fastq
13
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
1
bed bed3+
Organism
114
Homo sapiens
Biosample type
303
tissue
114
primary cell
56
in vitro differentiated cells
13
cell line
1
stem cell
Organ
31
epithelium
27
pancreas
9
blood vessel
9
vasculature
9
vein
5
kidney
1
liver
Project
70
AMP
44
T1D
Genome assembly (visualization)
110
hg19
88
GRCh38
Lab
64
Kyle Gaulton, UCSD
50
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
May, 2020
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
primary cell
monocyte
44
CD8-positive, alpha-beta T cell
20
pancreatic endocrine cell
11
endothelial cell of umbilical vein
9
pancreatic ductal cell
6
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