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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
33
DNase-seq
6
total RNA-seq
5
RRBS
4
Hi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
9
Transcription
6
DNA methylation
4
3D chromatin structure
Date released
33
June, 2019
10
July, 2019
4
August, 2017
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
41
bigWig
40
bam
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
55
Homo sapiens
Biosample type
51
tissue
4
primary cell
Organ
721
pancreas
530
connective tissue
417
adipose tissue
390
epithelium
302
kidney
256
heart
159
bone element
132
vasculature
129
blood vessel
107
artery
93
liver
68
brain
56
eye
56
limb
55
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
55
AMP
Genome assembly (visualization)
44
hg19
40
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
May, 2020
files.file_type!
bedpe bed3+
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
55 results
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DNase-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
1
4
1
1
1
1
gastrocnemius medialis
1
4
psoas muscle
2
1
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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