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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1755
ChIP-seq
409
ATAC-seq
210
total RNA-seq
176
DNase-seq
158
single cell RNA-seq
85
RNA microarray
84
snATAC-seq
68
WGBS
30
Hi-C
26
pCHi-C
21
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
68
DNA methylation
Date released
41
May, 2022
11
July, 2019
9
August, 2017
7
November, 2018
Available data
41
zippedFastqFolder
17
bam
17
fastq
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
tsv
Organism
68
Homo sapiens
Biosample type
41
primary cell
26
tissue
1
cell line
Organ
45
pancreas
41
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
limb
1
musculature of body
Project
41
HPAP
27
AMP
Genome assembly (visualization)
16
GRCh38
Lab
41
Klaus Kaestner, Upenn
27
AMP-T2D consortium
month_released!
May, 2020
files.file_type!
tsv
organ_slims!
limb
BIOSAMPLE
ASSAY
68 results
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WGBS
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 7 more…
cell line
HepG2
1
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