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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
single cell RNA-seq
3
ATAC-seq
Assay category
8
Transcription
3
DNA accessibility
Date released
6
February, 2021
3
October, 2019
1
November, 2018
1
September, 2018
Available data
3109
bam
2909
bigWig
bed narrowPeak
1411
tsv
1358
fastq
1042
bigBed narrowPeak
348
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
11
Homo sapiens
Biosample type
7
tissue
2
in vitro differentiated cells
2
primary cell
Organ
5
kidney
3
connective tissue
1
adipose tissue
1
liver
Project
11
AMP
Genome assembly (visualization)
3
hg19
Lab
11
AMP-T2D consortium
Audit category:
5
audit script error
month_released!
May, 2020
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
11 results
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single cell RNA-seq
ATAC-seq
tissue
kidney
5
adipose tissue
1
liver
1
in vitro differentiated cells
adipocyte
2
primary cell
pancreatic cell
2
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