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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
29
DNase-seq
22
ATAC-seq
4
Hi-C
1
FAIRE-seq
Assay category
57
DNA binding
52
DNA accessibility
4
3D chromatin structure
Target of assay
47
histone
47
histone modification
26
narrow histone mark
21
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
47
June, 2019
19
August, 2017
14
September, 2018
13
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
3
October, 2022
1
March, 2020
1
November, 2020
Available data
523
bigWig
519
bam
409
fastq
295
bed narrowPeak
225
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
113
Homo sapiens
Biosample type
571
tissue
357
cell line
113
primary cell
24
in vitro differentiated cells
Organ
65
epithelium
25
pancreas
22
vasculature
18
blood vessel
16
kidney
15
connective tissue
14
vein
11
brain
9
musculature of body
6
heart
3
eye
2
liver
Project
110
AMP
3
HPAP
Genome assembly (visualization)
106
hg19
105
GRCh38
Lab
110
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
23
inconsistent ontology term
3
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
month_released!
May, 2020
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
FAIRE-seq
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
1
pancreatic beta cell
7
1
pancreatic alpha cell
6
1
skeletal muscle satellite cell
7
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