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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
9
DNase-seq
1
FAIRE-seq
Assay category
84
DNA binding
10
DNA accessibility
Target of assay
77
transcription factor
27
RNA binding protein
15
recombinant protein
13
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
312
November, 2017
210
June, 2019
97
May, 2019
73
November, 2018
70
October, 2019
64
April, 2019
50
December, 2017
45
October, 2018
42
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
118
fastq
117
bam
106
bigWig
94
bed narrowPeak
94
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
5
tsv
1
csv
Organism
94
Homo sapiens
Biosample type
71
cell line
23
tissue
Organ
51
liver
27
blood
27
bodily fluid
10
spleen
3
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
94
AMP
Genome assembly (visualization)
93
GRCh38
92
hg19
Lab
94
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
May, 2020
BIOSAMPLE
ASSAY
94 results
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ChIP-seq
DNase-seq
FAIRE-seq
cell line
HepG2
44
GM12878
27
tissue
spleen
9
1
liver
4
2
body of pancreas
2
brain
2
omental fat pad
1
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