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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
53
total RNA-seq
36
ATAC-seq
Assay category
171
DNA binding
53
Transcription
36
DNA accessibility
Target of assay
152
histone
152
histone modification
85
broad histone mark
67
narrow histone mark
16
transcription factor
6
RNA binding protein
3
control
Date released
175
May, 2021
May, 2020
40
May, 2024
20
May, 2022
14
August, 2021
7
August, 2020
3
September, 2020
1
October, 2017
Available data
270
bed narrowPeak
260
bigWig
195
fastq
160
bam
153
zippedFastqFolder
84
tagAlign
67
tsv
64
xls
63
txt
7
hic
5
bedpe bed3+
3
cool
2
bed bed3+
2
bed broadPeak
1
bedpe
1
vcf
Organism
260
Homo sapiens
Biosample type
180
primary cell
61
tissue
14
cell line
5
in vitro differentiated cells
Organ
40
heart
34
liver
11
pancreas
10
epithelium
Project
135
T1D
115
AMP
10
HPAP
Genome assembly (visualization)
210
hg19
186
GRCh38
Lab
AMP-T2D consortium
175
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
10
Klaus Kaestner, Upenn
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
month_released!
May, 2020
lab.title!
Struan F.A. Grant, CHOP
AMP-T2D consortium
BIOSAMPLE
ASSAY
260 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
primary cell
monocyte
84
51
CD8-positive, alpha-beta T cell
33
2
pancreatic alpha cell
7
pancreatic beta cell
3
tissue
left cardiac atrium
40
liver
20
islet of Langerhans
1
cell line
HepG2
14
in vitro differentiated cells
embryonic stem cell
5
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