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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
324
total RNA-seq
161
ChIP-seq
80
single cell RNA-seq
41
ATAC-seq
8
DNase-seq
4
WGBS
2
FAIRE-seq
2
small RNA-seq
1
Hi-C
Assay category
41
DNA accessibility
Date released
14
September, 2018
7
August, 2020
5
October, 2017
5
September, 2017
4
March, 2020
3
August, 2017
3
September, 2020
Available data
65
bam
64
bed narrowPeak
56
fastq
41
bigWig
39
zippedFastqFolder
22
bigBed narrowPeak
2
bed broadPeak
2
tsv
Organism
41
Homo sapiens
Biosample type
32
primary cell
7
tissue
2
cell line
Organ
41
pancreas
34
epithelium
21
liver
9
connective tissue
4
adipose tissue
4
heart
3
blood vessel
3
vasculature
2
artery
2
brain
2
limb
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
spleen
Project
31
AMP
10
HPAP
Genome assembly (visualization)
37
GRCh38
31
hg19
Lab
30
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
month_released!
May, 2020
BIOSAMPLE
ASSAY
41 results
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ATAC-seq
primary cell
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
tissue
body of pancreas
4
islet of Langerhans
3
cell line
EndoC_BH1
2
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