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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
788
total RNA-seq
103
single cell RNA-seq
20
pCHi-C
16
small RNA-seq
3
snDrop-seq
2
RNA microarray
1
ATAC-seq
Assay category
907
Transcription
1
DNA accessibility
Date released
452
February, 2021
May, 2020
116
July, 2018
99
August, 2021
89
August, 2017
47
July, 2019
38
May, 2021
28
March, 2020
25
February, 2020
19
November, 2019
8
October, 2019
6
April, 2018
4
February, 2023
2
December, 2019
Available data
1714
bam
1562
bigWig
933
tsv
917
bed narrowPeak
561
bigBed narrowPeak
377
fastq
213
bed broadPeak
205
bed bed3+
188
tagAlign
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
933
Homo sapiens
Biosample type
933
tissue
225
primary cell
131
in vitro differentiated cells
118
cell line
4
stem cell
Organ
457
connective tissue
399
adipose tissue
275
pancreas
111
heart
58
bone element
23
brain
14
blood vessel
14
vasculature
12
kidney
11
liver
7
limb
7
musculature of body
5
eye
5
nerve
4
artery
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
933
AMP
Genome assembly (visualization)
775
hg19
774
GRCh38
Lab
932
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
month_released!
May, 2020
BIOSAMPLE
ASSAY
933 results
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total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
snDrop-seq
RNA microarray
ATAC-seq
tissue
adipose tissue
381
1
islet of Langerhans
267
1
bone tissue
58
heart left ventricle
3
18
1
heart right ventricle
1
17
1
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