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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
total RNA-seq
124
ATAC-seq
96
single cell RNA-seq
snATAC-seq
47
WGBS
4
Hi-C
Assay category
237
Transcription
124
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Date released
122
August, 2021
113
May, 2022
76
February, 2023
59
September, 2020
18
February, 2021
14
May, 2023
7
August, 2020
3
October, 2022
Available data
142
fastq
132
zippedFastqFolder
64
bed narrowPeak
64
xls
57
txt
10
bigWig
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
412
Homo sapiens
Biosample type
276
primary cell
136
tissue
Organ
152
epithelium
152
pancreas
136
kidney
Project
276
HPAP
136
AMP
Genome assembly (visualization)
85
GRCh38
4
hg19
Lab
3614
AMP-T2D consortium
280
Kyle Gaulton, UCSD
276
Klaus Kaestner, Upenn
136
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
3
audit script error
month_released!
May, 2020
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
412 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
42
29
31
1
Langerhans cell
85
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
tissue
kidney
49
75
11
1
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