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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
46
ChIP-seq
45
ATAC-seq
6
DNase-seq
2
Hi-C
2
single cell RNA-seq
1
FAIRE-seq
Assay category
58
Transcription
52
DNA accessibility
46
DNA binding
2
3D chromatin structure
Target of assay
33
histone
33
histone modification
23
broad histone mark
10
narrow histone mark
9
control
4
transcription factor
Date released
66
February, 2021
47
October, 2019
35
February, 2023
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
Available data
117
bam
97
bigWig
84
bed narrowPeak
58
tsv
35
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
6
tagAlign
2
hic
1
bedpe bed3+
1
tar
Organism
158
Homo sapiens
Biosample type
68
tissue
66
cell line
24
primary cell
Organ
944
pancreas
684
connective tissue
597
liver
519
epithelium
491
adipose tissue
372
heart
349
kidney
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
158
AMP
Genome assembly (visualization)
137
GRCh38
107
hg19
Lab
158
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
May, 2020
May, 2019
BIOSAMPLE
ASSAY
158 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
coronary artery
1
36
2
tibial artery
1
23
1
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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