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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
41
WGBS
34
ChIP-seq
34
single cell RNA-seq
21
snATAC-seq
20
total RNA-seq
1
Hi-C
Assay category
98
DNA accessibility
54
Transcription
41
DNA methylation
34
DNA binding
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
626
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
May, 2020
314
October, 2019
262
August, 2021
218
June, 2019
198
February, 2023
193
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
Available data
134
zippedFastqFolder
68
bed narrowPeak
59
fastq
58
bam
50
bigWig
30
bigBed narrowPeak
txt
1
bed bed3+
Organism
228
Homo sapiens
Biosample type
134
primary cell
66
tissue
28
cell line
Organ
98
pancreas
80
epithelium
41
liver
27
blood
27
bodily fluid
7
spleen
1
musculature of body
Project
134
HPAP
94
AMP
Genome assembly (visualization)
68
hg19
30
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
36
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
May, 2020
files.file_type!
txt
BIOSAMPLE
ASSAY
228 results
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Clear Filters
ATAC-seq
WGBS
ChIP-seq
single cell RNA-seq
snATAC-seq
total RNA-seq
Hi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
18
spleen
7
skeletal muscle tissue
1
cell line
GM12878
27
HepG2
1
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